logo
August 9th 2018: We updated the server to version 1.4.0. (Changelog)

Results for: example run

Input motifs

# IUPAC PWM reverse Comp. motif AvRec fract. occurence Download
1 SSGATGASTCA 0.839 0.977
2 TGAYGTCA 0.418 0.938
3 CGSSSSCG 0.307 0.366

Motif # 1

0-th order logo 0-th order logo (reverseComplement)

Motif Performance and Motif Distribution on Sequences

AUSFC curve   Precision Recall Curve  
partial ROC5 curve Precision Recall Curve  
Positional Distribution  

Best matches with our motif database

name e-value query motif database PWM reverse Comp. DB entry
JunD 5.3E-03
Fra-1 5.9E-03
Fra-2 5.9E-03
SMARCC1 8.7E-03
JunB 9.2E-03

Motif # 2

0-th order logo 0-th order logo (reverseComplement)

Motif Performance and Motif Distribution on Sequences

AUSFC curve   Precision Recall Curve  
partial ROC5 curve Precision Recall Curve  
Positional Distribution  

Best matches with our motif database

name e-value query motif database PWM reverse Comp. DB entry
CREB-3L2 3.3E-02

Motif # 3

0-th order logo 0-th order logo (reverseComplement)

Motif Performance and Motif Distribution on Sequences

AUSFC curve   Precision Recall Curve  
partial ROC5 curve Precision Recall Curve  
Positional Distribution  

Best matches with our motif database

name e-value query motif database PWM reverse Comp. DB entry

General settings

Input Sequences: ExampleData.fasta
Motif File Format: MEME
Motif File: motif_init.meme
Search on both strands: True
Background Model Order: 2

Additional settings

Run motif scanning: True
Motif scanning p-value cutoff: 0.0001
Run motif evaluation: True
Run motif-motif compare: True
MMcompare database: GTRD_v1804_HUMAN
MMcompare e-value cutoff: 0.10