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August 9th 2018: We updated the server to version 1.4.0. (Changelog)

Results for example run

Refined Motifs

# IUPAC PWM reverse Comp. motif AvRec frac. occurrence Download
1 AGGRTGASTCA 0.839 0.976
2 GGRTGACT 0.442 0.957
3 SSYGGGCG 0.365 0.104

Motif # 1

0-th order logo 0-th order logo (reverseComplement)
1-th order logo 2-th order logo

Motif Performance and Motif Distribution on Sequences

AUSFC curve   Precision Recall Curve  
partial ROC5 curve Precision Recall Curve  
Positional Distribution  

Best matches with our motif database

name e-value query motif database PWM reverse Comp. DB Entry
Fra-2 1.8E-03
JunD 1.9E-03
Fra-1 1.9E-03
JunB 2.8E-03
SMARCC1 2.9E-03

Motif # 2

0-th order logo 0-th order logo (reverseComplement)
1-th order logo 2-th order logo

Motif Performance and Motif Distribution on Sequences

AUSFC curve   Precision Recall Curve  
partial ROC5 curve Precision Recall Curve  
Positional Distribution  

Best matches with our motif database

name e-value query motif database PWM reverse Comp. DB Entry
JunD 1.7E-02
SMARCC1 1.8E-02
c-Jun 2.1E-02
Fra-1 2.3E-02
c-Fos 3.3E-02

Motif # 3

0-th order logo 0-th order logo (reverseComplement)
1-th order logo 2-th order logo

Motif Performance and Motif Distribution on Sequences

AUSFC curve   Precision Recall Curve  
partial ROC5 curve Precision Recall Curve  
Positional Distribution  

Best matches with our motif database

name e-value query motif database PWM reverse Comp. DB Entry
KLF7 4.3E-01
DbpA 4.8E-01

General settings

Job id: 00000000-0000-0000-0000-000000000001
Input sequences: ExampleData.fasta
Search on both strands: True
Background Sequences: not set
Background Model Order: 2

Refinement stage

Model Order: 2
Flank extension: 0

Additional settings

Run motif scanning: True
Motif scanning p-value cutoff: 0.0001
Run motif evaluation: True
Run motif-motif compare: True
MMcompare database: GTRD_v1804_HUMAN
MMcompare e-value cutoff: 0.50