August 9th 2018: We updated the server to version 1.4.0. (Changelog)
Motif scan
A fasta file with at least 10 bound nucleotide sequences. Each sequence is assumed to carry at most one motif. If you have long sequences with several motifs, consider chopping them up into several shorter sequences.
Upload a motif file. The motif has to match the selected motif file format. BaMM models have the extension *.ihbcp.
Please select the file format of the motif file.
Upload a background model file (extension *.hbcp). You only have to provide this file when you are uploading a BaMM model.
When checked, motifs can be both on the plus and minus strand.
Only motif positions with a p-value smaller than this will be reported as binding positions.
Evaluate the performance of the motif on the input set. Required for plotting performance plots.
Compare motifs with our database.
The e-value limit will be used to define a threshold for motif comparisons between the inserted model and the database.
Motif database used for annotating trained models.
You can give your job a name to better distinguish between multiple runs.
